PROJECT 1: HUMAN GENETIC VARIANCE AND CELLULAR RESPONSES TO SEXUALLY TRANSMITTED INFECTIONS

Damage to reproductive organs as a result of inflammatory responses to STIs can lead to severe complications such as pelvic inflammatory disease, ectopic pregnancy and infertility. Multiple environmental factors including the infecting strain, dose and frequency of infections, and composition of the microbial communities in the urogenital tract contribute to the severity of disease manifestation and ensuing sequelae. Similarly, co-infection with other sexually transmitted pathogens may act synergistically to worsen disease. Finally, host genetics likely plays an important role in susceptibility to infection and ensuing immunopathologies. This project will address the role played by human genetic polymorphisms that regulate cellular interactions and responses to C. trachomatis alone or in the context of N. gonorrhoeae and vaginal microbiota components. We will identify and characterize genetic variants that affect STIs by applying two parallel and complementary approaches. First, we will use a discovery platform for genome-wide association studies (GWAS) of cellular traits called Hi-HOST (high throughput human in vitro susceptibility testing). Hi-HOST combines precise measurement of phenotypes in cells derived from hundreds of normal, genotyped individuals with genome-wide association to identify genetic differences that underlie the phenotypic variation. Furthermore, we propose to extend the Hi-HOST framework to examine how co-infection and the microbiota can act synergistically or antagonistically on the immune response and how human genetic differences can modulate these effects. Second, we will carry out GWAS of clinical traits and outcomes using the STING cohort. This dual approach will allow for study of human genetic variation in both the controlled experimental setting of identical infections with Hi-HOST and the more clinically relevant but complex setting of patients.

We predict that overlap of SNPs identified by Hi-HOST and GWAS of the STING cohort will highlight human variation affecting both cellular infection phenotypes and clinical phenotypes and outcomes. Thus, we will determine not only which human genetic variants are associated with susceptibility to STIs but also intermediate phenotypes (such as cytokine levels, miRNA, and microbiota composition) that are likely responsible for the altered physiology. This will facilitate identification of biomarkers and possible drug targets, as well as specific genetic populations that might benefit most from targeted therapies.

Personnel:

Dennis Ko, Ph.D., M.D..

Assistant Professor, Department of Molecular Genetics & Microbiology and Department of Medicine, Center for Human Genome Variation and Center for Microbial Pathogenesis, Duke University Medical Center

Raphael Valdivia, Ph.D.

Associate Professor, Department of Molecular Genetics & Microbiology, Center for Microbial Pathogenesis, Duke University Medical Center

Thomas Urban, PharmD, Ph.D.

Assistant Professor in Medicine, Center for Human Genome Variation, Duke University Medical Center

Liuyang Wang, Ph.D.

Postdoctoral Fellow, Department of Molecular Genetics & Microbiology, Center for Microbial Pathogenesis, Duke University Medical Center